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Type 1 Diabetes Mellitus

ICD-10 Code E10

What is the clinical spectrum of Type 1 Diabetes Mellitus?

Type 1 diabetes mellitus (T1DM) is one of the two main subtypes of the metabolic disease diabetes mellitus (DM). Its etiology, pathophysiology and treatment are fundamentally different from Type 2 diabetes mellitus (T2DM) 12, 10.

 

T1DM is an autoimmune disease most frequently diagnosed in children and adolescents. It is characterized by chronically elevated plasma glucose concentrations, caused by T-cell-mediated destruction of pancreatic insulin-producing beta-cells. Insulin deficiency disrupts glucose transport into insulin-dependent cells, resulting in intracellular energy deprivation. Clinical manifestations of insulin deficiency include fatigue, dehydration and excessive thirst.

Metabolic pathways such as lipolysis and ketogenesis, that are triggered to compensate for the lack of entry of glucose into cells, result in weight loss and muscle wasting. Diabetic ketoacidosis from excessive ketone accumulation can cause nausea, vomiting, abdominal pain, impaired cognition and change in behaviour. The tissue damage produced by the autoimmune attack leads to chronic inflammation in the pancreas, increasing the risk of diabetic complications 3, 4.

 

T1DM-associated diabetic complications commonly include cardiovascular disease, nephropathy, retinopathy, diabetic wounds, psychiatric disorders, dental issues, and peripheral neuropathy.

Over half of all limb amputations are due to impaired wound healing,  most often triggered by hyperglycemia, chronic inflammation, circulatory dysfunction, hypoxia, autonomic and sensory neuropathy, and impaired neuropeptide signaling 5.

 

T1DM exhibits heterogeneous phenotypes, with inter-individual variability in age of onset which can range from childhood to adulthood, in the rate of beta-cells destruction which can be rapid in some individuals and slowly progressive in others, and in the type of immune cells involved in the autoimmune attack.

What do we know about the etiology of Type 1 Diabetes Mellitus?

Prospective longitudinal studies of individuals at risk for developing T1DM indicate that the disease progresses through three main stages, duration of which was found to vary across individuals. In stage 1, two or more autoantibodies against the pancreatic islets are present, in the context of normal blood glucose levels, that in stage 2 progress to dysglycemia. At stage 3, the beta cells are destroyed by autoimmunity to the point they are no longer able to ensure optimal insulin production, producing typical symptoms of autoimmune T1DM (hyperglycemia, weight loss, ketoacidosis) 6.

The autoantibodies detected at early stages in T1DM patients were typically directed against insulin B chain peptides, GAD65 enzyme, tyrosine phosphatase-like transmembrane protein and other pancreatic proteins erroneously identified by the immune system as foreign 7.

Genetics plays a major role in the development of pancreatic islet autoimmunity. Genetic factors that increase the risk of developing T1DM include polymorphisms in human leukocyte antigen (HLA) and other immune system-related genes 110.

In over 50 associated loci identified by GWAS and other genetic association studies, the majority of T1DM-associated variants are involved in gene regulation and only a few genes, like HLA-II, INS, CTLA4 and PTPN22, show substantial effects on T1DM.

Several shared risk genes or genetic polymorphisms between T1DM and T2DM were found. The regulatory impacts on shared genes and pathways generate overlapping biological mechanisms, which mediate pleiotropic effects on T1DM and T2DM 11.

Studies on monozygotic and dizygotic twins indicate that environmental factors affect the incidence and age-at-onset of T1DM in genetically susceptible individuals Link for Giwa Both endogenous factors, such as dietary content and intestine microbiota, and exogenous factors, such as environmental toxins and viral infections, are believed to play a role in the triggering of the autoimmune attack and progression to overt T1DM 8, 9.

Within T1DM patient populations, epidemiological, clinical, genetic, immunological, histological, and metabolic differences suggest heterogeneity in pathophysiological mechanisms 1, 2.

Consequently, a spectrum of endotypes 1 (T1DE1) and 2 (T1DE2) was proposed according to the age of onset, the degree of beta-cells destruction, the presence or the absence of immune infiltration in pancreatic islets (insulitis), the type of HLA allele, the abundance CD8+ T and CD20+ B cells, the quality of proinsulin processing, and the degree of proinsulin to C-peptide ratio 4.

 

How similar are human and animal endocrine systems?

 

This is not an exhaustive list of species-specific differences, nor can one be made given their unknown full extent, but rather an example of how these differences impact the face, construct, predictive, and intrinsic validity of animal models.

 

Not all species-specific differences can be accounted for in animal models, as there are hundreds of them, their relevance to Type 1 diabetes mellitus (T1DM) is unclear, and their interaction with other organ systems in the animal model makes it difficult to predict how they would have behaved within the human system.

 

Endocrine systems of human and non-human animals differ at every level, from molecular to organism level, contributing to poor translation of animal studies to humans.

 

Species-specific differences in structure and function of pancreatic islets

Inter-species differences in the cytoarchitecture of the pancreatic islets of Langerhans have consequences on the function of islets, susceptibility to diabetes, and disease pathophysiology.

In the islets of Langerhans, alpha, beta, delta, gamma and epsilon endocrine cells secrete hormones insulin, glucagon, somatostatin, pancreatic polypeptide, and ghrelin, that have distinct functions. While the beta cells-secreted insulin lowers blood glucose by promoting cellular uptake, the alpha cells-secreted glucagon raises blood glucose by stimulating hepatic release. The secretion of both hormones is inhibited by delta cells-secreted somatostatin. By regulating, stimulating and inhibiting each other through paracrine and autocrine communication, endocrine cells maintain balanced blood glucose levels and metabolic homeostasis.

 

In human islets, most beta, alpha, and delta cells are aligned along blood vessels with no particular order, indicating that islet microcirculation likely does not determine the order of paracrine interactions 12. By contrast, in mice the alignment of endocrine cells relative to blood vessels is more organized with beta cells that cluster around intra-islet capillaries.

 

In both human and murine beta cells, increase in blood glucose levels leads to increased ATP production, closure of K-ATP channels causing membrane depolarisation, influx of extracellular calcium (Ca2+), and insulin granule exocytosis. However, as described in the section 'Species-specific differences in glucose regulation', there are major inter-species differences at every step of this process.

Imaging of cytoplasmic free Ca2+ concentration, [Ca2+]i, showed that beta cell oscillatory activity was not coordinated throughout the human islets as it was in the mouse islets, suggesting inter-species differences in beta-cell network dynamics and insulin release patterns.

Mathematical modelling of Ca2+ activity in human and mouse islets showed that Ca2+ activity in human islets was more vulnerable to inhibition of highly connected beta cells, termed hubs, than in mouse islets 13. In contrast to human islets, mouse islets have a more uniform beta cell distribution, making them less dependent on hubs. This observation suggests that humans may be more susceptible than mice to loss of hubs, that can occur through autoimmune attack (T1DM) or toxicity/inflammation (T2DM).

 

Furthermore, human islets responded with an increase in [Ca2+]i when lowering the glucose concentration, which could be explained by the fact that human islets contain proportionally fewer beta cells and more alpha cells than do mouse islets 14, pointing to inter-species differences in glucose regulation. Indeed, contrarily to beta cells, alpha cells are electrically active at low glucose concentration, maintaining tonic Ca2+ influx that supports glucagon secretion. 

 

The neurotransmitter acetylcholine has a major role in the function of the insulin-secreting pancreatic beta cells. Cholinergic input to exocrine acini ducts and endocrine islets of Langerhans stimulates secretion of digestive enzymes and hormones.

In contrast to mouse islets, cholinergic innervation of human islets is sparse. Instead, the alpha cells of human islets provide paracrine cholinergic input that primes the beta cell to respond optimally to increases in glucose concentration. Cholinergic signaling pathways within human islets could potentially be a therapeutic target in diabetes 15. However, because of inter-species differences in pancreatic islets structure and function, this therapeutic lead, and probably many other leads that have the potential to benefit patients, are likely to have failed in animal models of diabetes.

 

Species-specific differences in gene expression

As it is the case for the overwhelming majority of species, humans have a single insulin gene. Rodents, however, have two non-allelic insulin genes that, despite their differences in structure, are both equally expressed. It is unclear why rodents have two insulin genes and whether these genes might have different functions, which limits extrapolation to the single insulin gene system in humans 16, 17.

The effects of insulin gene duplication in rodents may be further amplified, since insulin transcriptionally regulates the expression of more than 150 genes in various tissues.

 

Differences in sequences of insulin genes between humans and animals affect the regulation of expression of insulin genes, as well as the structure and function of encoded proteins 18.

Overall homology of the insulin promoter between humans and rodents is only around 45 to 48%. Many features of cis-regulatory elements and trans-acting factors are differentially regulated in human and mouse islets 16.

There are also marked inter-species divergences in DNA binding between mouse and human glucose regulatory transcription factors. As many as 41%-89% of  orthologous promoters bound by a protein in one species were not bound by the same protein in the second species.

Species-specific differences in cis regulatory elements (transcription factor binding motifs, epigenetic marks) and trans regulatory elements (expression levels, post-translational modifications) affect how glucose related-genes respond to insulin.

Consequently, the auto-regulatory mechanisms by which genes involved in glucose metabolism regulate their own expression and expression of other related genes via cis and trans inputs, diverge between humans and other species.

For instance, while the gene expression of gluconeogenic enzyme phosphoenolpyruvate carboxykinase is highly regulated by insulin in rodents, this insulin-mediated repression is less pronounced in humans, suggesting alternative regulatory pathways 21.

The inter-species differences in insulin protein sequence and post-translational modifications are likely to manifest in inter-species differences in insulin function and proteolytic processing.

For example, guinea pigs have highly divergent sequences of insulin genes and the biological activities of these insulins differ, acting more as a growth factor than as a metabolic hormone 17.

Similarly, as a consequence of specific changes in sequences of insulin genes, some species of New World monkeys have insulin hormones with lower potency, despite sharing 85.5% identity with the human insulin precursor.

Of particular relevance for T1DM, inter-species differences in insulin protein sequence can influence how the immune system recognizes insulin and targets insulin-producing beta cells. In case of T2DM, they may impact how insulin binds to its receptor and thereby produce inter-species differences in pathophysiology of insulin resistance. The response in preclinical studies of T1DM animal models to gene therapy via introduction of the human insulin gene may yield results that are not translatable to humans.

 

Species-specific differences in glucose regulation

Even though insulin is essential for maintaining optimum blood glucose levels in all vertebrate species, its function has evolved in species-specific manners.

The two most frequently used species to model T1DM/T2DM, mice and rats, differ significantly from humans at gene, protein, pathway, cellular, tissue, organ and organism levels of glucose regulation 18.

The entry of glucose into beta cells is enabled by glucose transporters (GLUT) via concentration-dependant facilitated diffusion. Inter-species differences in glucose transport have major repercussions for understanding genetic risk and how beta cells respond to glucose.

The principal glucose transporter present in rodent beta cells is glucose transporter 2 (GLUT2). Greatly reduced GLUT2 expression levels have been shown to correlate with elements of T2DM in various diabetic rodent models. However, human islets predominantly express GLUT1 and GLUT3, and GLUT2 expression levels do not correlate with human T2DM 1923

In comparison to GLUT2, GLUT1 has higher binding affinity and lower transport capacity for glucose, meaning that human beta cells are more sensitive than rodent beta cells to small changes in glucose, supporting a fine-tuned insulin secretion. The lower binding affinity combined with higher transport capacity of GLUT2-rich rodent beta cells that produce burst-like insulin release, is believed to correlate with higher baseline glucose levels and higher metabolic rates in rodents 20.

The specificities of human glucose metabolic pathways are critical for the regulation of human glucose homeostasis under normal and diabetic conditions.

In both mice and humans, upon entry into beta cells, glucose undergoes glycolysis to produce pyruvate, which then enters mitochondria to undergo either the Krebs cycle pathway or the anaplerotic pathway. In the former, pyruvate is converted into acetyl CoA which reduces NAD+ to NADH, that is subsequently fed into mitochondrial electron transport chain, ultimately producing ATP by oxidative phosphorylation. In the latter, pyruvate is converted into oxaloacetate that replenishes the Krebs cycle intermediates.    

However, in human islets, glucose metabolism via the anaplerotic pathway, that employs pyruvate carboxylase (PC) enzymes to convert pyruvate into oxaloacetate, was reported to be lower compared to rodent islets. Consequently, human islets appear to be less dependent on PC for insulin secretion, whereas PC-driven anaplerosis is the major contributor to insulin secretion in rodents 22

 

The stimulus-secretion coupling in human beta cell diverges from other species with respect to ion channel composition and function.

The ATP-sensitive potassium (KATP) channel plays a critical role in insulin secretion, by linking glucose metabolism-related ATP production to membrane depolarisation. At low ATP, KATP channels are open, allowing the potassium (K+) ions to flow out. When ATP rises, KATP channels close, producing depolarisation that opens voltage-gated Ca2+ channels. The sharply increased intracellular Ca2+ binds to Ca2+-sensing synaptotagmines on insulin granules, triggering the fusion of insulin-containing vesicles with the plasma membrane. In humans, polymorphisms in the KATP channel subunit genes have been associated with increased risk of T2DM. However, the loss of function in subunits that compose KATP channels does not cause dysregulation of insulin secretion in mice, probably due to unknown species-specific compensatory mechanisms 24, 25.

Voltage-gated Na+ channels amplify membrane depolarisation necessary for activation of voltage-gated Ca2+ channels. In contrast to mice, human beta cells carry voltage-gated Na+ channel isoforms Nav1.6 and Nav1.7. This means that Nav1.7 antagonists developed for use as analgesics could have serious implications for human patients who face potential impairment of insulin secretion as a side effect. Such adverse effects of drugs would not be predictable in mice since they lack functional beta cell Nav1.7 27.

The expression of voltage-gated delayed phase ionic current and delayed rectifier potassium channels, that ensure controlled insulin release by modulating depolarisation/repolarisation of the beta cell membrane, also differ between humans and mice.

Additionally, the kinetics of insulin release varies across species owing to inter-species differences in the functional importance of L-type Ca2+ plasma membrane channels 26. In contrast to rodents, L-type Ca2+ channels are less dominant and other Ca2+ channels, such T-type and P/Q-type, appear to play a considerable role in humans. As a result, drugs targeting L-type Ca2+ channels are likely to produce misleading results on safety and efficacy in mouse models of T1DM. 

At the tissue level, in humans the skeletal muscle is the primary site of glucose clearance, accounting for 50% to 90% of glucose uptake, making it the primary insulin-sensitive tissue and the primary site of dysregulation in human peripheral insulin resistance. By contrast, liver is the primary site of glucose clearance in rodents, with 5 to 10-fold higher glycogen storage in the liver than in muscle, versus 10-fold more glycogen storage in muscle than in liver in humans. This inter-species difference has functional implications since various aspects of glucose regulation differ between human skeletal muscle and rodent liver 18.

 

Glucose homeostasis relies on multiple glucose-sensing cells in the body that monitor blood glucose levels and respond to adjust its glycemia 28. Hepatocytes express the enzyme glucokinase that acts as a glucose sensor, and can switch between gluconeogenesis and glycolysis depending on glucose availability.

Every animal species has a signature blood glucose level or glycemic set point, likely reflecting their evolutionary adaptation. Normoglycemia of one species would be life threatening for another. For example, mouse normoglycemia can be considered diabetic for humans 29.

 

As a consequence of reliance on animal research for insights on glucose regulation, several erroneous concepts were established. For example, in contrast to rodent islets, glucagon input from the alpha cell to the insulin-secreting beta cell is necessary to fine-tune the distinctive human set point.

This and many other inter-species differences have major implications for safety of patients and success of therapies to treat diabetes. For instance, treatments that inhibit glucagon pathways might also eliminate their crucial input to beta cells in humans with diabetes.

 

Species-specific immunological and genetic differences in T1DM

Given the crucial role of autoimmunity in T1DM, species-specific features of innate and adaptive immune systems are likely to play a part in poor predictive validity of animal models of diabetes.

For example, treatment of T1DM by antithymocyte globulin, that targets multiple T cell antigens, had shown promising results in animal models of T1DM. However, after receiving the same treatment in clinical trials, patients with T1DM had suffered cytokine release syndrome accompanied by a depletion of regulatory T (Treg) cells 30.

 

The lack of understanding of the precise role of individual components of the immune system in T1DM, combined with species-specific characteristics of the immune system, makes it difficult to know to which extent immune-mediated responses in animal models of T1DM match that of T1DM patients.

 

In T1DM, autoreactive CD4+ and CD8+ T cells destroy beta cells, driven by autoantigens like GAD65 enzymes and insulin that are presented by MHC class II on the surface of antigen-presenting cells.

In humans, the proinflammatory cytokines IFN-α, IFN-β, IFN-γ, and IFN-λ, secreted by T cells, macrophage, NK cells and other immune cells, play a major role in mounting of innate and adaptive immune responses to islet antigens 31.

While in humans these cytokines activate the transcription factor STAT4, that plays a pivotal role in insulitis, beta cells apoptosis, and cytotoxicity, the activation of STAT4 is much more restricted in mice 32, leading to underestimation of its role in T1DM mouse models.

 

The gold standard non-obese diabetic (NOD) mouse model of T1DM mimics the autoimmune beta cell destruction and STAT4 responses characteristic of human T1DM. Nonetheless, the immune response in NOD mice diverges from that in human T1DM. For example, NOD mice exhibit a stronger Th1 response, leading to direct cytotoxic CD8+ T-cell-mediated beta-cell destruction, whereas in humans, Th17 plays a more significant role, contributing to chronic islet inflammation and beta cell dysfunction, rather than immediate cytotoxicity. The fact that T1DM mouse models is likely underrepresent Th17-mediated mechanisms additionally limits their translational relevance.

In addition, insulitis - the inflammation of the islets of Langerhans - shows both qualitative and quantitative species-specific differences between humans with T1DM and animal models of T1DM. In humans, insulitis is less intense and is found in less than 10% of islets. In contrast, the NOD mouse model of T1DM exhibit a more aggressive form of insulitis that touches over 50% of pancreatic islets. As a result, studies in NOD mice are likely to underestimate the role of Treg cells and environmental modulators that have the potential to slow down disease progression in humans.

 

As part of innate immunity, complement system enhances inflammation, opsonization, and cell lysis. Human studies showed elevated complement components in pancreatic islets of T1DM patients with insulitis. In humans, the complement system is tightly regulated by inhibitors, such as complement factor H (CFH) and factor-H related proteins (CFHR), and their dysregulation can contribute to T1DM 33. However, as genomic studies have revealed, mice lack certain CFHR genes present in humans, such as CFHR-C 34.

Although the impact of species-specific disparities in CFH is currently unknown, they have the potential to produce inter-species divergencies in complement system regulation, immune response, and severity of insulitis.

 

The anti-inflammatory cytokine IL-10 suppresses immune responses and promotes Treg function, thereby mitigating beta cell destruction. While in humans, IL-10 is produced both during Th1 and Th2 responses, in mice IL-10 is much less prominent in Th1 than in Th2 35.

This inter-species difference in IL-10 production has significant implications for T1DM mouse models, including for the Th1-biased NOD mouse, in which limited Il-10 production leads to a more aggressive disease phenotype than in humans, under-represented immune regulatory mechanisms compared to humans, and under-estimated human therapeutic responses.

In NOD mice, the binding pocket of the MHC class II allele H2-Ag7 protein, responsible for binding peptides and presenting them on the surface of antigen-presenting cells to T cells, is similar to the binding pocket of the analogous human HLA-DQ. Yet, NOD mice do not express the class II MHC molecule I-E, meaning that they rely solely on I-Ag7 which has a unique peptide binding groove.

The human class II MHC alleles associated with T1DM have a greater degree of polymorphism than the NOD mouse MHC genes, which allows for a more diverse range of antigen presentation 36. Unlike in NOD mice, the HLA complex in humans includes several loci that independently confer risk of T1DM 37.

The efficacy of antigen-specific treatments might differ depending on the MHC alleles involved and the way in which peptides bind in the MHC groove. For example, a single amino acid difference in the B chain of human insulin seems to affect the ability of porcine insulin, but not human insulin, to prevent development of T1DM in NOD mice.

 

Cluster of differentiation 28 (CD28) is involved in T1DM autoimmune response as a co-stimulatory receptor on T cells that binds to CD on antigen-presenting cells and thereby provides signals for T-cell activation. In T1DM patients, the expression of CD28 infiltrating T cells is elevated.

In mice, CD28 is expressed on all CD4+ and CD8+ T cells, whereas in humans it is expressed on all CD4+ but only about 50% of CD8+ T cells 38.

Because of species-specific differences in types of CD and surface expression of CD types, the effects on human patients of drugs that target CD are likely to be underestimated or overestimated.

For example, the CD28 antagonist Abatacept showed efficacy in preclinical studies, but not in T1DM patients 39.

In the same manner, the CD28 agonist Theralizumab, also known as TGN1412, caused catastrophic cytokine storm with systemic organ failures in its first human trial, despite being approved as safe in mice and in primates 40.

 

Administration of low-dose IL-2, alone or combined with rapamycin, prevented hyperglycemia in NOD mice. Additionally, low-dose IL-2 was reported to cure recent-onset T1DM in NOD mice 41. However in humans, the same treatment had significant detrimental effects on beta cell function and survival 42

Natural killer (NK) cells of NOD mice exhibit a defect in functional maturation and have impaired cytotoxic functions, which may render these mice resistant to the toxic effects of IL-2 treatment, leading to failure to predict toxicity to humans.

 

While a single dose of expanded antigen-specific Tregs  could reverse the T1DM phenotype in NOD mice, the attempts to reproduce the same results in T1DM patients have repeatedly failed 43.

 

As the above examples show, the faith in the ability of animal models of T1DM to recapitulate human insulitis pathology has deleterious repercussions for understanding underlying disease mechanisms and for developing safe and effective therapies for T1DM. Decades of massive failure in clinical trials of hundreds of immune interventions approved in animal models of T1DM have prompted numerous calls for a human-centred approach to research 44, 45.

 

It was suggested that using animal models with a humanized immune system might improve translatability to humans, however, such an approach would face persistent, insurmountable challenges: the role of the human immune system in T1DM is complex and not fully understood, the equivalence of humanized animals to the human immune system was never demonstrated by objective measures 46, and the cross-talk between the human immune system and the rest of human organ systems cannot be recapitulated in animals.

 

Additionally, another aspect that cannot be recapitulated in humanized animal models, is the development and adaptation of the immune system in response to the environment, including the microbiome, diet and housing. This missing aspect in animal models is crucial, since as twin studies show, the human immune system is more shaped by the environment than by genes 47.

 

 

Species-specific differences in tropism for T1DM-associated viruses

Several viruses were associated with the development of T1DM, particularly through their potential to trigger autoimmune responses that damage insulin-producing beta cells 48, 49, 50.

 

Species-specific genetic variations in the host's cell surface receptors and the immune system have important implications for species’ and individuals' responses to viral infections.

For example, humans possess human-specific single nucleotide polymorphisms (SNPs) in IFIH1 gene, that are absent in non-human Ifih1 gene, and that confer human-specific vulnerability (gain-of-function variants) or protection (loss-of-function variants) to T1DM.

The IFIH1 gene encodes the melanoma differentiation-associated protein 5 (MDA5), a cytosolic pattern recognition receptor expressed in immune cells and in pancreatic beta cells, that can detect dsRNA from viral infections and trigger an innate immune response.

Human-based genetic and population studies have shown that increased activity of IFIH1/MDA5 in genetically susceptible individuals can promote the development of T1DM, by increasing type I interferon production, beta cells apoptosis, and innate-adaptive immune system crosstalk that subsequently amplifies autoimmune responses 51, 52.

None of the animal species used in T1DM animal research, including NOD/STZ/BB mice and non-human primates (NHP), possess the human-specific SNPs in IFIH1 gene, hindering the study of MDA5-mediated autoimmunity and development of MDA5-targeting therapies 53.

This also raises the question of whether NHP, that do not naturally develop T1DM, possess other protective SNPs in orthologues of human genes involved in T1DM and that could jeopardize safe and effective translation of preclinical studies to T1DM patients.

 

Moreover, in different animal species employed to model T1DM, different viruses may show varying degrees of tropism for pancreatic cells, leading to differences in disease outcomes that hamper translatability to humans 54.

 

 

Species-specific differences in gut microbiome

The immune system homeostasis is modulated by the gut microbiome which varies significantly across species, making findings from microbiological studies in animals not directly translatable to humans.

In diabetes, inflammatory responses can be triggered by an imbalance between beneficial and pathogenic bacteria (dysbiosis), by an increased intestinal permeability to bacterial endotoxins, by bacterial stimulation of pro-inflammatory cytokines, or by elevated levels in the blood of gram-negative bacteria cell walls-derived lipopolysaccharides. 

 

In T1DM patients, it has been reported that the proinflammatory environment in the gut is associated with the combination of an increased relative abundance of Bacteroidetes and a decreased level of Firmicutes, regardless of geographical location 55.

Studies from human cohorts suggest that dysbiosis contributes to T1DM primarily by promoting Th17/Th1 autoimmunity, gut barrier permeability, and beta cells destruction 56, 57.

Dysbiosis of the gut microbiota is suggested to occur early in life, aggravating gut inflammation and influencing the immune system, before the onset of T1DM. The relationship between T1DM autoimmunity and gut microbiome dysbiosis is likely to be bidirectional and needs to be further investigated using human-based metagenomics and metaproteomics 58.

 

The study of the microbiome has historically relied on mouse studies, based on coarse comparisons at higher taxonomy hierarchy level with a poorly characterized mouse gastrointestinal (GI) microbiota. However, advances in metagenomics that have enabled a much more granular view of mouse microbiota at lower taxonomy level, have shed light on previously unknown profound species-specific differences in GI microbiome composition, quantity, and function.

 

A comparative survey of the phylogenetic composition of 16 human subjects and 3 commonly used mouse lines indicated that their microbiota show similarity at the genus level but is quantitatively very different 59.

Comparison of comprehensive mouse microbiota genome to microbiota from the human GI genomes shows an overlap of 62% at the genus but only 10% at the species level, demonstrating that human and mouse gut microbiota are largely distinct 60.

What is more, mouse and human microbial strains of the same species can have divergent gene content and function, as is exemplified by the species Limosilactobacillus reuteri which has mouse-adapted and human-adapted strains, however, with very different functions.

Previously, DNA sequencing of fecal samples of mouse strains of diverse genetic, provider, housing and diet backgrounds and comparison to the human microbial GI genome demonstrated that only 4% of mouse GI microbial genes were shared with human GI microbial genes 61.

 

Rats tend to have a higher abundance of the phylum Bacteroidetes compared to mice. Mice, on the other hand, have a higher abundance of the family Muribaculaceae within the phylum Bacteroidetes 62.

Even within closely related species, like striped hamsters and Djungarian hamsters, there can be differences in bacterial families and genera that reflect their distinct lifestyles and dietary habits 63, 64.

 

Even though the gut microbiota in humans was closer to that in NHP, significant differences remain between the two species. For example, African green monkeys show opposite microbial taxa and genes responses to a typical high-protein, high-fat, low-fiber Western diet compared to humans, suggesting that NHP are not an appropriate model organism for studying the effect of the human gut microbiota on host metabolism and human diseases 65.

 

Efforts have been made to humanize mice with human microbiota and to inter-cross inbred strains. However, it was found that the GI microbiome in mice varied immensely depending on the housing conditions, even more so than on the genetic background, and that the inter-individual variation in GI microbiome decreased after 10 generations 59.

 

The so called human microbiota-associated (HMA) mouse models, that are designed to study the contribution of a dysbiotic microbiome to development of human diseases by comparing disease phenotypes of germ-free mice colonized with the fecal microbiota of patients to those of mice colonized with the microbiota of healthy controls, do not replicate the patient microbiome 66. Indeed, engrafted HMA mice showed only a partial resemblance to the donor microbiota. It is believed that only the microbiome phylotypes that are adapted to the mouse intestinal environment, and that survive an ecological shift after engraftment, will remain in the mouse gut.

Human-based research has shown that the gut microbiome plays a crucial role in shaping both the innate and adaptive immune system from infancy through adulthood through human host-specific interactions between human host-specific immune system and human host-specific microbiota.

Therefore it is not surprising that HMA mice have a low immune maturation with reduced numbers of adaptive and innate intestinal immune cells when compared with mice that harbor a murine microbiota.

This indicates that the engrafted human microbiota does not accurately mirror the microbial composition found in patients, nor does it capture the dysbiosis and immune responses associated with human diseases.

Face validity - How well do animal models replicate the human disease phenotype?

 

Since the end of the 19th century, several dozen animal species and strains were used to model human Type 1 diabetes mellitus (T1DM) with the goal to probe disease causes and risk factors, study disease mechanisms, develop new therapies and assess therapeutic candidates.

None of these T1DM animal models have faithfully recapitulated the pathophysiology of T1DM, nor the inter-individual heterogeneity in disease phenotypes.

 

Methods so far employed to induce symptoms of T1DM in animals include selective breeding of strains with spontaneous symptoms, gene editing, chemical induction, viral induction, and surgical induction.

 

With time and growing knowledge of advantages and drawback of each animal model, the animal research community had developed specific animal models of T1DM tailored to each induction type with the aim of recapitulating specific subsets of diabetes pathology.

However, there are several major limitations to this approach that cannot be addressed, regardless of the animal species, experimental manipulation, or method of diabetes induction used - the most important being that complex interactions between human-specific features of pancreas anatomy, glucose regulation, metabolism, genetic background, gene expression, microbiome, and immune system, cannot be recapitulated in animals.

 

A narrow focus on specific pathological pathways and specific features of diabetes in specific species/strains to address specific questions is another critical limitation of animal models, aggravated by the fact that certain animal models recapitulate some T1DM symptoms in some experimental conditions and not in others, making it very difficult to compare findings across species/strains and to learn how individual pathways fit into the broader biological context. 

 

Chemically-induced T1DM animal models

Streptozotocine (STZ), alloxan and cyclophosphamide figure among chemicals most commonly used to induce T1DM 67, 68.

At low doses administered over several days, STZ can induce a moderate beta cell toxicity and T-cell mediate immune response. Administered as a single high dose,  STZ causes rapid beta cells death, leading to severe insulin deficiency.

Autoimmunity and immune cell infiltration (insulitis) are absent in this method, hindering the development of immune-modulating therapies for T1DM.

In addition, the toxicity of chemicals may not be limited to the pancreas and can affect other organs, creating confounding adverse effects, higher morbidity and high mortality in animals.

Another major limitations of the use of chemicals to model T1DM is the difficulty in producing irreversible symptoms in model organisms. Spontaneous recovery from chemically-induced hyperglycemia was reported in several species and strains. For instance, while STZ treatment of guinea pigs induced insulin deficiency, pancreatic beta cell loss, glycosuria, and weight loss, hyperglycemia was only transitory. Induction of T1DM with alloxan produced a diabetes-like condition early after injection, however, all signs of diabetes disappeared within 2 weeks 69.

In confirmation of this observation, decrease in hyperglycemia over time was reported in STZ neonatal treatment of spontaneously hypertensive rats 70. Spontaneous recovery was also seen in larger model organisms, since partial correction of hyperglycemia was observed in pigs several weeks after STZ injection, despite the use of high STZ dose 71.

​Spontaneous and genetic T1DM animal models​

Unlike chemically-induced animal models, the Lewis-IDDM rat develops spontaneous insulin-dependent diabetes through immune-mediated beta cell destruction, closely mimicking the autoimmune nature of T1DM. These rats exhibit insulitis, and overt diabetes with equal incidence in both males and females 72.

 

The gold standard non obese diabetic (NOD) mouse is a polygenic model susceptible to autoimmune diabetes, developed by selective breeding of mice that develop spontaneous diabetes. This mouse model displays hyperglycemia, insulitis, destruction of beta cells as well as several diabetic complications, such as neuropathy, nephropathy, and retinopathy 73.

Of note, the frequency of T1DM in NOD females is 3-fold higher than in NOD males, whereas the prevalence of T1DM in the human population is slightly higher in males than in females. In contrast to T1DM patients, NOD mice appear to be resistant to development of ketoacidosis and can remain alive several weeks after disease onset even in absence of insulin administration 74.

 

The commonly used Akita mouse is a spontaneous model that carries a heterozygous missense mutation in the insulin 2 gene that ultimately results in endoplasmic reticulum stress, pancreatic beta cell destruction, insulin deficiency, and hyperglycemia 75

Unlike in human T1DM, the Akita mouse pathophysiology is not related to an autoimmune process and does not show insulitis, which limits its use for studying autoimmune aspects of T1DM.

 

While the bio-breeding diabetes-prone (BB) rat displays spontaneous autoimmune destruction of beta cells, hyperglycemia and ketoacidosis, it is also associated with T-lymphopenia, which is not a hallmark of T1DM in humans 76. Instead, humans with T1DM show altered T-cell populations, including increased effector memory T cells and decreased T regulatory cells.

 

The Long-Evans Tokushima lean (LETL) rat manifests spontaneous autoimmune destruction of beta cells without T-lymphopenia, with hyperglycemia, weight loss, insulitis, however at a low incidence of 20% 77, which makes it an unreliable model for T1DM.

Virally-induced T1DM animal models

Infection with encephalomyocarditis, coxsackie and lymphocyte choriomeningitis viruses was shown to induce immune-mediated destruction of beta cells in mouse, rat, hamster and NHP models of T1DM. 

Importantly, the ability of the viral induction method to trigger symptoms of T1DM was found to vary according to the susceptibility of the host species and strain to the virus.

Hyperglycemia induced by coxsackie virus B4 infection in SJL/J mice was largely transient, whereas the metabolic impact appeared to be enduring 7879Additionally, it was reported that in NOD mice coxsackie virus infection did not directly initiate beta-cell autoreactive immunity but appeared to accelerate this process 80​, although it remains unclear whether these findings are relevant for humans.

 

Surgically-induced T1DM animal models

Surgical procedures, such as pancreatectomy, islet transplantation and thymectomy employed to induce T1DM in mice, rats, rabbits, dogs, pigs, and NHP mostly elicit moderate hyperglycemia followed by pancreatic regeneration, which does not occur in T1DM patients.

 

Partial or total removal of pancreatic tissue directly reduces or eliminates insulin production, leading to hyperglycemia, weight loss, excessive thirst and other diabetes symptoms.  However, the surgically-induced animal models do not involve immune-mediated beta cell destruction and insulitis, which are central to human T1DM. In partial pancreatectomy models, remaining islet cells may compensate, making the diabetic phenotype unstable. In comparison to humans, rodents have a greater capacity for beta cell regeneration, obscuring the long-term effect of the lack of insulin 81, 82, 83.

The removal of thymus to induce autoimmune responses in the pancreas can lead to broader immune deficiencies which are likely to confound results of studies in thymectomy-derived animal models of T1DM.

The surgical induction methods also carries the risk of accidental removal of exocrine acinar cells during surgery, which can lead to malabsorption and nutritional deficiencies 84, indirectly producing confounding effects on glucose metabolism and insulin sensitivity.

Equally relevant is the observation that animal models of diabetic microvascular complications do not recapitulate the features of segmental demyelination, axon loss and fiber loss 85. As a result, in contrast to diabetic patients who develop chronic skin ulcer, skin wounds heal in mouse models of diabetes.

Construct validity - How well do the mechanisms of disease induction in animals reflect the currently understood etiology of the human disease?

 

Chemical, surgical, viral, spontaneous and genetic animal models are inadequate for investigating the mechanisms of human T1DM, both because of the inherent species-specific differences and the nature of induction methods.

Chemically-induced T1DM animal models

In chemically-induced animal models, beta cells are degraded through direct cytotoxic action of glucose analogues STZ and alloxan. Given that it is widely believed that T-cell mediated autoimmunity occurs prior to beta cells degradation 6, this method of induction is not consistent with the current state of knowledge.

What is more, in STZ-treated Scidd mice diabetes developed even in absence of T and B cells 86, highlighting the disconnect between the disease mechanisms in experimentally-induced T1DM animal models and the human T1DM. 

Due to its structural similarity to glucose, both alloxan and STZ enter beta cells via the GLUT2 transporter, where they exert their effect through ROS-mediated oxidative damage and DNA alkylation, respectively 68. Therefore, based on animal data, GLUT2 was for long considered as a potential therapeutic target for T1DM. However, this belief was refuted by subsequent evidence showing that in glucose transporters GLUT1, GLUT3 and sodium-glucose co-transporters SGLT play a major role in glucose stimulated insulin-release in humans 87. ​

It was proposed that oncogenic action of STZ could explain the spontaneous recovery from hyperglycemia in chemically-induced T1DM models, however since no insulinoma was found, the mechanism of this recovery remain unclear 70

It is also noteworthy that the method of chemical induction can hamper the investigation into T1DM by triggering off-target oxidative stress, cellular and tissue toxicity, making it difficult to distinguish between mechanisms that are relevant for diabetes from those that are not.

To prevent cytotoxic damage to other organs, T1DM was induced in dogs and primates by low dose of STZ combined with partial pancreatotomy 88, however, this method still falls short of recapitulating human-relevant mechanisms of T1DM.

​Spontaneous and genetic T1DM animal models​

Being an inbred strain 72the Lewis-IDDM rat lacks the human-specific genetic background and the genetic heterogeneity seen in T1DM patients. Even though the autoimmune attack is mimicked, the inter-species differences in immune system and in microbiome put in doubt the value of this model in understanding the exact mechanisms of autoimmunity in human T1DM.

In BB rats 76, lymphopenia is due to a frameshift mutation in the Ian4 gene, which affects T-cell survival and thymic output. In this model, lymphopenia is considered as essential for diabetes development since it involves the loss of regulatory T cells that are essential for suppressing autoimmune processes. However, in humans with T1DM the cause of autoimmunity is multifactorial and peripheral T cells counts are within normal range.

The LETL rat 77 carries two recessive genes involved in the pathogenesis of insulitis, one of which is closely linked with RT1u MHC haplotype - the functional analogue of the human HLA complex responsible for antigen presentation. Despite this analogy, owing to inter-species differences in sequences, the peptide binding motifs in RT1 molecules are not identical to those in HLA molecules. As a result, an antigen that triggers autoimmunity in LETL rats may not do so in humans.​

The Akita mouse carries a spontaneous point mutation in the Insulin 2 (Ins2) gene, which causes misfolding of proinsulin, triggering ER stress and subsequently beta cell apoptosis 89. However, this mutation if not found in T1DM patients and T1DM is not caused by a defect in insulin folding. The fact that Akita mice do not recapitulate the T1DM-relevant autoimmune processes and the human-relevant immune system is likely to produce misleading conclusion on safety and efficacy of therapies for T1DM 75

The particularity of the NOD mouse is that it carries several dozen insulin-dependent diabetes loci, including those that are linked to MHC class II region, T-cell regulation, and cytokine signaling 90. In that sense, the NOD mouse is more similar to the multifactorial etiology of human T1DM than the majority of other T1DM animal models. Nevertheless, the genes, the gene expression regulation, the glucose metabolism, the microbiome, and the immune pathways of NOD mice differ in humans, producing misleading assumptions on the efficacy of therapeutic candidates.

Indeed, the inadequacy of NOD mice as models of human T1DM is best illustrated by the fact that several immunotherapies designed to treat the autoimmune-mediated pathogenesis in T1DM had shown promising results in NOD mice, only to be discarded in clinical trials 91,92

Dozens of human genetic polymorphisms that contribute to the risk for T1DM cannot be recapitulated in animals. Even if the NOD mouse was genetically edited to better match the human T1DM-associated variants, it would still fall short of capturing the effects of human-specific and patient-specific genetic backgrounds.

Moreover, the complex interplay of genetic, environmental and lifestyle factors, that plays a key role in triggering and progression of T1DM, cannot be recapitulated in genetically-altered animal models.

Virally-induced T1DM animal models

In humans, coxsackie A virus, coxsackie B virus, echovirus, rubella virus, cytomegalovirus, mumps virus, rotavirus, HIV, SARS CoV2, Hepatitis C virus and others are known to have tropism for pancreatic beta cells and are therefore classified as diabetogenic viruses 93.

To experimentally induce symptoms of T1DM in animals, encephalomyocarditis, coxsackie, and lymphocyte choriomeningitis viruses are typically used.

However, there is no evidence that EMCV and LMCV cause diabetes in humans 94, 95. These viruses are therefore likely to induce T1DM-like symptoms in animal models through mechanisms that are not relevant for human T1DM.

To date, the mechanisms that underly the viral induction of T1DM remain unclear 54, which could be explained by species-specific differences in tropism for T1DM-associated viruses, underscoring the need to switch to human-based tools.

Surgically-induced T1DM animal models

Surgical induction does not correspond to any of the causes of T1DM observed in patient populations.

Crucially, pancreatectomy does not allow to investigate the autoimmune mechanisms of T1DM.

Furthermore, the method itself can trigger mechanisms that interfere with T1DM pathways, inducing erroneous hypotheses about disease mechanisms.

For instance, renal denervation can reduce sympathetic nervous system activity, thereby improving insulin sensitivity and glycemic control in animal models 96.

Thymectomy can lead to impairment of adaptive immune processes to islet antigens, which represents a major barrier for recapitulating the mechanisms that underpin the T-cell-mediated damage to pancreatic islets in T1DM. To date, there has been only anecdotal clinical evidence of thymectomy resulting in increase of autoimmunity 97​​

Predictive validity - How well do animal models predict safety and efficacy of therapies in patients?

 

The predictive validity of animal experiments for endocrine diseases is poor, below the 7.9% average for all indications 98. The likelihood for clinical approval of drugs for endocrine diseases was only 6.6% over 2011-2020.

The overwhelming majority of therapies that had shown promising results in T1DM animal models, including GAD65(alum) antigen-specific immunotherapy, dipeptidyl peptidase-4 inhibitor sitagliptin combined with proton pump inhibitor lansoprazole, and IL-1 inhibitors/IL-1 receptor antagonists, failed to demonstrate meaningful benefits in clinical trials.

While the discovery of the insulin therapy through experiments in dogs marked a landmark breakthrough more than 100 years ago, it stands as a rare exception. In the decades since, research in animals to discover new treatments for diabetes has not led to medical advances of added value for T1DM patients.

Insulin administration through daily injections, or an insulin pump, remains to date the mainstay of treatment 2, 9.

 

The insulin therapy itself aims to compensate for the missing insulin but does not halt the autoimmune-mediated destruction of pancreatic beta cells.

Despite glucose control with insulin therapy, many T1DM patients develop cardiovascular disease, neuropathy, retinopathy, chronic kidney disease and

 

Numerous pharmaceutical agents prevented and even reversed T1DM in NOD mice, yet, these successes were not replicated in clinical trials. Although some interventions allowed to delay the onset or progression of disease in certain subsets of patients, none have resulted in a cure.

In some cases, therapies approved in preclinical trials have even worsened the condition in T1DM patients. One such example is the rapamycin/interleukin-2 combination treatment. Effective in treating T1DM in NOD mice, administration of rapamycin/interleukin-2 in clinical trials resulted in deterioration of beta cells function in patients 42

 

Another major damage caused by animal research is the elimination in preclinical studies of potentially life-saving therapies due to lack of efficacy in animals. For instance, while abatecept had significantly improved C-peptide response in patients with new-onset T1DM, it had shown completely opposite results in NOD female mice 99.

 

After over 20 years in the clinic, Provention Bio’s CD3 antibody teplizumab was approved by the FDA in 2022 as treatment for delaying the onset of T1DM 100.

To date, prevention and treatment of T1DM remain suboptimal, with large inter-individual variations in responses to treatments. In clinical trials for antithymocyte globulin, for instance, half of participants with stage 2 T1DM remained diabetes-free for up to four years, while the other half progressed to stage 3 T1DM within two months 101.

Ethical validity - How well do animal experiments align with human ethical principles?

 

Preclinical

Ethics is a human-specific philosophical concept. Animal experimentation is unethical in essence by human standards, since it involves physical constraint, psychological suffering and deprivation of freedom, social interactions, natural environment, and life purpose.

In addition to this baseline, animal experiments inflict severe clinical harm in animals 102:

Table S5: Severity classification of chemical disease models

Diabetes: causing up to severe clinical signs

Table S13: Severity classification of genetically altered (GA) lines

GA lines with diabetes like NOD mice, BB rats: Severe

GA lines resulting in long-term moderate pain or short-term severe pain: Severe

GA lines resulting in long-term moderate anxiety or short-term severe anxiety: Severe

Table S4: Severity classification of clinical signs

Skin wounds - Causing up to severe clinical signs: Mice: >10 mm body, >3 mm face - Rats: >30 mm body, >10 mm face; Skin open with signs of infection (wet discharge of blood or pus) or open to muscle or bone.

Table S3: Severity classification of surgery and surgical induction of disease

Major surgery causing permanent or progressive loss of function of specific organs/senses/body systems; Organ/cell transplantation or device testing where rejection/failure may lead to severe distress, death or impairment of the general condition of the animal: Severe

Surgical complications resulting in lethality

Table S6: Severity classification of infectious diseases

Viral diseases : up to severe clinical signs or long-lasting moderate clinical signs

 

Clinical

While there is no consensus on whether an unethical act can be justified by a pursuit of a hypothetically ethical outcome, it was suggested that animal research was necessary to advance safe and effective treatments for human diseases.

However, statistics consistently show that clinical success rates of drugs developed and tested in animals is very low, raising the question of whether it is ethical to put the health of patients at risk.

Over 2011-2020, the Phase I to II transition success rate, that primarily focuses on assessing the safety and tolerability of drugs, was 43.3% for endocrine diseases, well below the 52% average of all indications 98.

Phase II to III transition success rate for endocrine diseases group was 26.6% versus 28.9% average for all indications, highlighting the low effectiveness of drugs candidates developed in animal models of human endocrine diseases.

Intrinsic validity - How well do animal models capture the clinical heterogeneity of the human disease?

 

The heterogeneous pathogenesis and phenotypes of Type 1 diabetes mellitus (T1DM) are not recapitulated in animal models of T1DM.

Extrinsic validity - How well does animal experimentation generate reliable and reproducible outcomes?

 

It is often argued that although animal models have severe limitations, experimenting on animals enables to gather insights that may be valuable. However, the basic precondition for a hypothetical benefit is not met since the majority of animal experiments is irreproducible 103.

Contributing factors include flawed experimental design, variation in animal strains and experimental conditions, and lack of transparency on methodology and results of animal studies.

In a bid to improve the quality of reporting of animal experiments, the ARRIVE - Animal Research: Reporting of In Vivo Experiments - guidelines, were published in 2010 and updated to ARRIVE 2.0 in 2020 104.

Nonetheless, and in spite of significant investment in dissemination, various incentives and training of animal researchers, the Arrive guidelines remain poorly implemented 105, 106.

As a result of weak relevance, rigor and reliability of animal studies, erroneous and misleading hypothesis are generated, animal and human lives are needlessly sacrificed and dozens of billions of dollars are annually wasted 107.

Beyond the problem of experimental design and reporting of animal studies, there are deep-seeded cultural reasons that are not likely to be addressed any time soon, such as the "publish or perish" culture that discourages from unbiased analysis and reporting of negative results and rewards exaggerated and overhyped claims 108.

In Summary

Type 1 Diabetes Mellitus (T1DM) is an autoimmune disease characterized by chronic hyperglycemia. It is associated with an increased risk of cardiovascular disease, nephropathy, retinopathy, diabetic wounds, psychiatric disorders, dental issues and peripheral neuropathy, even in individuals receiving insulin therapy.

Within T1DM patient populations, clinical, genetic, immunological, histological and metabolic differences suggest heterogeneity in pathophysiological mechanisms.

In vivo modeling of T1DM causes severe suffering in animals. Yet, owing to human-specific features of pancreatic anatomy and function, glucose regulation, genetic background, gene expression regulation,  and immune system, animal models of T1DM do not faithfully recapitulate the T1DM phenotypes, pathophysiology, and responses to treatments. 

To date, there is no cure for T1DM and treated patients often go on to develop complications with potentially severe consequences.

A human-centric approach to research is needed to advance understanding of disease mechanisms and discovery of innovative treatments to prevent, treat, and reverse heterogenous T1DM endotypes. 

How is Human-Based In Vitro the Answer to Advance Biomedical Research into Type 1 Diabetes Mellitus

 

*To model heterogenous T1DM pathophysiology and phenotypes, using patient-derived 3D tissues/pancreas organoids/pancreas-on-chip.

 

*To determine the role of genetic polymorphisms in T1DM, by gene editing (overexpression, knock-out, knock-down) and gene perturbation (CRISP interference, siRNA) in human 3D pancreas tissues/organoids/pancreas-on-chip.

 

*To identify epigenetic drivers of pancreatic beta cells destruction and to test potential epigenetic therapies for T1DM, using epigenetic editing (CRISPR activation/repression, lncRNA) in T1DM patient-derived pancreatic 3D tissues/organoids/multi-organs-on-chip.

 

*To determine the contribution of individual and combined inducers to T1DM,  by supplementing the culture medium with nutrients and chemicals in human healthy 3D pancreatic tissues/organoids/(multi)organs-on-chip 109. To determine individuals’ susceptibility to a certain inducer type, using T1DM patient-derived pancreatic 3D tissues organoids/(multi)organs-on-chip with patient-specific genetic background.

 

*To model human pancreatic beta cells-targeted autoimmunity, and study the crosstalk between innate and adaptive immunity in T1DM, using immunocompetent T1DM patient-derived iPSCs/pancreatic 3D tissues/organoids/pancreas-on-chip 110, 111, 112.

 

*To study how different dietary components influence the gut microbiome, using human/patient-derived in vitro intestine and ex vivo fermentation systems 113, 114, 115.

 

*To determine the role of the gut microbiome in T1DM pathogenesis and response to therapies : microbiome-host interactions, role of individual gut microbes, microbiome dysbiosis etc., by using immunocompetent T1DM patient-derived tissues/pancreas-gut-microbiome-on-chip.

                                                          

*To study the metabolic and endocrine mechanisms of glucose regulation in T1DM, by recapitulating the human-relevant crosstalk between the pancreas and other organs, such as liver, gut, adipose tissue, and skeletal muscle, in patient-derived iPSC multiorgan-chip 116.

 

*To determine the capacity of T1DM-associated viruses to trigger T-cell mediated autoimmunity, by infecting immunocompetent human pancreatic tissues/organoids/pancreas-on-chip with human diabetogenic viruses 117, 118.

 

*To uncover mechanisms of human T1DM-related wound healing impairment and to develop new treatments for diabetic ulcers, using immunocompetent T1DM patient-derived 3D skin models/skin organoids/skin-on-chip 119, 120.

  

*To study pathogenic mechanisms that are distinct and common to each T1DM endotype, using genomics, epigenomics, transcriptomics, microbiomics and proteomics AI-powered analysis in large scale patient-derived pancreatic 3D tissues /organoids/pancreas-on-chip, and by linking multi-omics data to clinical and biochemical patient data. To discover new therapeutic leads that target pathogenic pathways.

 

*To study mechanisms of T1DM diabetic nephropathy, retinopathy and peripheral neuropathy in healthy/patient-derived human kidney, retinal and neuronal organoids/(multi) organs-on-chip 121.

 

*To find new predictive biomarkers for real-time assessment of response to treatments, using organs-on-chip with integrated sensors 122.

 

*To test efficacy of drug candidates for T1DM by high-throughput screening in patient-derived 3D tissues/organoids/organs-on-chip.

 

*To test safety and efficacy of single and combination therapies for T1DM in patient-specific organoids/organs-on-chip, in a personalized medicine approach.

Last Updated: September 2025

Although in vitro methods have inherent limitations, their relevance to human biology far exceeds that of animal research.

Animal model organisms were never comprehensively compared to humans and scientifically validated. Complementing in vitro methods with animal experiments is not effective for human patients, because species-specific differences prevent reliable integration and translation of results to humans.

While animal research benefits from experimenting on a complete organism, model organisms fail to replicate the interplay of thousands of human-specific features, from molecular level to organism level, and are therefore not representative of the complete human organism.

To address the challenges of individual human-based in vitro models, they can be integrated with other human-based in vitro methods, AI-driven analysis, clinical data, and real-world patient data.

 

 

Have you leveraged in vitro methods in unique ways? We would love to hear how! Join the conversation to exchange ideas, collaborate and inspire new directions in human-based science!

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